Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research

Punyavathi; Hosaholalu Boregowda Manjunatha

doi:doi:10.11648/j.ab.20130102.15

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Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research

Punyavathi, Hosaholalu Boregowda Manjunatha

Published in Advances in Biochemistry (Volume 1, Issue 2)

Received: 30 May 2013 Accepted: Published: 20 July 2013

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Abstract

With the advent of genomic and proteomic research from bacteria to man an unprecedented data generated are pertinently analyzed and managed by the evolving science - bioinformatics. In scientific research, Bombyx mori L. is considered as a model insect for molecular studies along with the fruit fly (Drosophila melanogaster) and a central model species for genome studies in moths and butterflies (the insect order Lepidoptera). As a consequence, new findings in the fields of proteome, genome and bioinformatics have resulted in the exponential generation of data that are stored in assorted array of databases. These databases not only reducing the gap and time while allowing information’s to be accessed also emerged as a highly valuable platform through which scientific community can use, exchange and analyze molecular data across the world on mouse click. The computational approaches in various biological disciplines including agriculture/sericulture is not merely a reflection of a general extended usage of computers and the internet, but due to the creation of useful databases coupled with appropriate software’s and methods for access by the rest of the scientific community with ease. Application of bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains but that resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication. In addition, bioinformatics approaches give an insight, uncovering the lineage with gene and protein count while B. mori and Drosophila encompass ~18,000 and ~16,000 (Genes) and ~9,000 and ~22,000 (Proteins) respectively, to discover their diversity and functional properties. In view of this, we have documented the innovations made in the emerging field “Seri-bioinformatics” as valuable resources aiming at feasible comparative studies among allied species and application in the field of biotechnology and biomedical sciences.

Published in	Advances in Biochemistry (Volume 1, Issue 2)
DOI	10.11648/j.ab.20130102.15
Page(s)	33-42
Creative Commons	This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.
Copyright	Copyright © The Author(s), 2024. Published by Science Publishing Group

Keywords

Bombyx Mori, Database, DNA, Informatics, Lepidoptera, Protein

References

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APA Style

Punyavathi, Hosaholalu Boregowda Manjunatha. (2013). Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Advances in Biochemistry, 1(2), 33-42. https://doi.org/10.11648/j.ab.20130102.15

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ACS Style

Punyavathi; Hosaholalu Boregowda Manjunatha. Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Adv. Biochem. 2013, 1(2), 33-42. doi: 10.11648/j.ab.20130102.15

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AMA Style

Punyavathi, Hosaholalu Boregowda Manjunatha. Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Adv Biochem. 2013;1(2):33-42. doi: 10.11648/j.ab.20130102.15

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@article{10.11648/j.ab.20130102.15,
  author = {Punyavathi and Hosaholalu Boregowda Manjunatha},
  title = {Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research},
  journal = {Advances in Biochemistry},
  volume = {1},
  number = {2},
  pages = {33-42},
  doi = {10.11648/j.ab.20130102.15},
  url = {https://doi.org/10.11648/j.ab.20130102.15},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ab.20130102.15},
  abstract = {With the advent of genomic and proteomic research from bacteria to man an unprecedented data generated are pertinently analyzed and managed by the evolving science - bioinformatics. In scientific research, Bombyx mori L. is considered as a model insect for molecular studies along with the fruit fly (Drosophila melanogaster) and a central model species for genome studies in moths and butterflies (the insect order Lepidoptera). As a consequence, new findings in the fields of proteome, genome and bioinformatics have resulted in the exponential generation of data that are stored in assorted array of databases. These databases not only reducing the gap and time while allowing information’s to be accessed also emerged as a highly valuable platform through which scientific community can use, exchange and analyze molecular data across the world on mouse click. The computational approaches in various biological disciplines including agriculture/sericulture is not merely a reflection of a general extended usage of computers and the internet, but due to the creation of useful databases coupled with appropriate software’s and methods for access by the rest of the scientific community with ease. Application of bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains but that resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication. In addition, bioinformatics approaches give an insight, uncovering the lineage with gene and protein count while B. mori and Drosophila encompass ~18,000 and ~16,000 (Genes) and ~9,000 and ~22,000 (Proteins) respectively, to discover their diversity and functional properties. In view of this, we have documented the innovations made in the emerging field “Seri-bioinformatics” as valuable resources aiming at feasible comparative studies among allied species and application in the field of biotechnology and biomedical sciences.},
 year = {2013}
}

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TY  - JOUR
T1  - Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research
AU  - Punyavathi
AU  - Hosaholalu Boregowda Manjunatha
Y1  - 2013/07/20
PY  - 2013
N1  - https://doi.org/10.11648/j.ab.20130102.15
DO  - 10.11648/j.ab.20130102.15
T2  - Advances in Biochemistry
JF  - Advances in Biochemistry
JO  - Advances in Biochemistry
SP  - 33
EP  - 42
PB  - Science Publishing Group
SN  - 2329-0862
UR  - https://doi.org/10.11648/j.ab.20130102.15
AB  - With the advent of genomic and proteomic research from bacteria to man an unprecedented data generated are pertinently analyzed and managed by the evolving science - bioinformatics. In scientific research, Bombyx mori L. is considered as a model insect for molecular studies along with the fruit fly (Drosophila melanogaster) and a central model species for genome studies in moths and butterflies (the insect order Lepidoptera). As a consequence, new findings in the fields of proteome, genome and bioinformatics have resulted in the exponential generation of data that are stored in assorted array of databases. These databases not only reducing the gap and time while allowing information’s to be accessed also emerged as a highly valuable platform through which scientific community can use, exchange and analyze molecular data across the world on mouse click. The computational approaches in various biological disciplines including agriculture/sericulture is not merely a reflection of a general extended usage of computers and the internet, but due to the creation of useful databases coupled with appropriate software’s and methods for access by the rest of the scientific community with ease. Application of bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains but that resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication. In addition, bioinformatics approaches give an insight, uncovering the lineage with gene and protein count while B. mori and Drosophila encompass ~18,000 and ~16,000 (Genes) and ~9,000 and ~22,000 (Proteins) respectively, to discover their diversity and functional properties. In view of this, we have documented the innovations made in the emerging field “Seri-bioinformatics” as valuable resources aiming at feasible comparative studies among allied species and application in the field of biotechnology and biomedical sciences.
VL  - 1
IS  - 2
ER  -

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Author Information

Punyavathi

Proteomics and Genomics Lab, Department of Studies in Sericulture, University of Mysore, Mysore 570006, Karnataka, India
Hosaholalu Boregowda Manjunatha

Proteomics and Genomics Lab, Department of Studies in Sericulture, University of Mysore, Mysore 570006, Karnataka, India

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Punyavathi, Hosaholalu Boregowda Manjunatha. (2013). Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Advances in Biochemistry, 1(2), 33-42. https://doi.org/10.11648/j.ab.20130102.15

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ACS Style

Punyavathi; Hosaholalu Boregowda Manjunatha. Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Adv. Biochem. 2013, 1(2), 33-42. doi: 10.11648/j.ab.20130102.15

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AMA Style

Punyavathi, Hosaholalu Boregowda Manjunatha. Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research. Adv Biochem. 2013;1(2):33-42. doi: 10.11648/j.ab.20130102.15

Copy | Download

@article{10.11648/j.ab.20130102.15,
  author = {Punyavathi and Hosaholalu Boregowda Manjunatha},
  title = {Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research},
  journal = {Advances in Biochemistry},
  volume = {1},
  number = {2},
  pages = {33-42},
  doi = {10.11648/j.ab.20130102.15},
  url = {https://doi.org/10.11648/j.ab.20130102.15},
  eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ab.20130102.15},
  abstract = {With the advent of genomic and proteomic research from bacteria to man an unprecedented data generated are pertinently analyzed and managed by the evolving science - bioinformatics. In scientific research, Bombyx mori L. is considered as a model insect for molecular studies along with the fruit fly (Drosophila melanogaster) and a central model species for genome studies in moths and butterflies (the insect order Lepidoptera). As a consequence, new findings in the fields of proteome, genome and bioinformatics have resulted in the exponential generation of data that are stored in assorted array of databases. These databases not only reducing the gap and time while allowing information’s to be accessed also emerged as a highly valuable platform through which scientific community can use, exchange and analyze molecular data across the world on mouse click. The computational approaches in various biological disciplines including agriculture/sericulture is not merely a reflection of a general extended usage of computers and the internet, but due to the creation of useful databases coupled with appropriate software’s and methods for access by the rest of the scientific community with ease. Application of bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains but that resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication. In addition, bioinformatics approaches give an insight, uncovering the lineage with gene and protein count while B. mori and Drosophila encompass ~18,000 and ~16,000 (Genes) and ~9,000 and ~22,000 (Proteins) respectively, to discover their diversity and functional properties. In view of this, we have documented the innovations made in the emerging field “Seri-bioinformatics” as valuable resources aiming at feasible comparative studies among allied species and application in the field of biotechnology and biomedical sciences.},
 year = {2013}
}

Copy | Download

TY  - JOUR
T1  - Seri-Bioinformatics: Emerging Trends and Challenges in Silkworm Research
AU  - Punyavathi
AU  - Hosaholalu Boregowda Manjunatha
Y1  - 2013/07/20
PY  - 2013
N1  - https://doi.org/10.11648/j.ab.20130102.15
DO  - 10.11648/j.ab.20130102.15
T2  - Advances in Biochemistry
JF  - Advances in Biochemistry
JO  - Advances in Biochemistry
SP  - 33
EP  - 42
PB  - Science Publishing Group
SN  - 2329-0862
UR  - https://doi.org/10.11648/j.ab.20130102.15
AB  - With the advent of genomic and proteomic research from bacteria to man an unprecedented data generated are pertinently analyzed and managed by the evolving science - bioinformatics. In scientific research, Bombyx mori L. is considered as a model insect for molecular studies along with the fruit fly (Drosophila melanogaster) and a central model species for genome studies in moths and butterflies (the insect order Lepidoptera). As a consequence, new findings in the fields of proteome, genome and bioinformatics have resulted in the exponential generation of data that are stored in assorted array of databases. These databases not only reducing the gap and time while allowing information’s to be accessed also emerged as a highly valuable platform through which scientific community can use, exchange and analyze molecular data across the world on mouse click. The computational approaches in various biological disciplines including agriculture/sericulture is not merely a reflection of a general extended usage of computers and the internet, but due to the creation of useful databases coupled with appropriate software’s and methods for access by the rest of the scientific community with ease. Application of bioinformatics tools and techniques not only facilitated detection of proteomic and genomic diversity among the species/strains but that resulted in finding a gap in the silkworm genome sequence of a strain that diverged during the course of domestication. In addition, bioinformatics approaches give an insight, uncovering the lineage with gene and protein count while B. mori and Drosophila encompass ~18,000 and ~16,000 (Genes) and ~9,000 and ~22,000 (Proteins) respectively, to discover their diversity and functional properties. In view of this, we have documented the innovations made in the emerging field “Seri-bioinformatics” as valuable resources aiming at feasible comparative studies among allied species and application in the field of biotechnology and biomedical sciences.
VL  - 1
IS  - 2
ER  -

Copy | Download