Rice species (Oryza sativa, L. and Oryza glaberrima, Steud) provide 20% energy of world’s food. Knowledge of genetic variability is important to remove duplicate materials for gene bank management and conservation. In this study, 59 microsatellite markers were used to assess the genetic diversity of 54 intraspecific (Oryza sativa) and interspecific (Oryza sativa X Oryza glaberrima) irrigated rice varieties by PCR-SSR. A total of 250 alleles were detected with an average of 4.24 alleles per SSR. Genetic diversity was ranged from 0.0713 (RM333, RM3744) to 0.8937 (RM251) to with an average of 0.4325. Polymorphism Information Content (PIC) varied from 0.0688 (RM333, RM3744) to 0.8854 (RM251) with an average of 0.3940. Rice genotypes were shared between five Groups based on their similarity with majority of them (64.81%) under Group V. Variety SK 7-8 within Group III was highly dissimilar to other varieties. Malian varieties were shared out between Groups II, III, VI and V. Strong genetic variability was observed within cluster V2 of Group V among the most cultivated and appreciated rice varieties such as Kogoni 91-1, Adny11 and BG90-2. Allelic variability observed among rice varieties could help breeding programs to identify cultivars with good agronomic traits for crop improvement.
| Published in | International Journal of Genetics and Genomics (Volume 6, Issue 2) |
| DOI | 10.11648/j.ijgg.20180602.11 |
| Page(s) | 22-29 |
| Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
| Copyright |
Copyright © The Author(s), 2024. Published by Science Publishing Group |
Genetic Diversity, Irrigated Rice, PCR-SSR, Mali
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APA Style
Sognan Dao, Halimatou Timbine, Oumarou Goita, Diakaridia Traore. (2018). Genetic Variability Assessment in Irrigated Rice (Oryza sativa and Oryza glaberrima) by PCR-SSR in Mali. International Journal of Genetics and Genomics, 6(2), 22-29. https://doi.org/10.11648/j.ijgg.20180602.11
ACS Style
Sognan Dao; Halimatou Timbine; Oumarou Goita; Diakaridia Traore. Genetic Variability Assessment in Irrigated Rice (Oryza sativa and Oryza glaberrima) by PCR-SSR in Mali. Int. J. Genet. Genomics 2018, 6(2), 22-29. doi: 10.11648/j.ijgg.20180602.11
AMA Style
Sognan Dao, Halimatou Timbine, Oumarou Goita, Diakaridia Traore. Genetic Variability Assessment in Irrigated Rice (Oryza sativa and Oryza glaberrima) by PCR-SSR in Mali. Int J Genet Genomics. 2018;6(2):22-29. doi: 10.11648/j.ijgg.20180602.11
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Download@article{10.11648/j.ijgg.20180602.11,
author = {Sognan Dao and Halimatou Timbine and Oumarou Goita and Diakaridia Traore},
title = {Genetic Variability Assessment in Irrigated Rice (Oryza sativa and Oryza glaberrima) by PCR-SSR in Mali},
journal = {International Journal of Genetics and Genomics},
volume = {6},
number = {2},
pages = {22-29},
doi = {10.11648/j.ijgg.20180602.11},
url = {https://doi.org/10.11648/j.ijgg.20180602.11},
eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijgg.20180602.11},
abstract = {Rice species (Oryza sativa, L. and Oryza glaberrima, Steud) provide 20% energy of world’s food. Knowledge of genetic variability is important to remove duplicate materials for gene bank management and conservation. In this study, 59 microsatellite markers were used to assess the genetic diversity of 54 intraspecific (Oryza sativa) and interspecific (Oryza sativa X Oryza glaberrima) irrigated rice varieties by PCR-SSR. A total of 250 alleles were detected with an average of 4.24 alleles per SSR. Genetic diversity was ranged from 0.0713 (RM333, RM3744) to 0.8937 (RM251) to with an average of 0.4325. Polymorphism Information Content (PIC) varied from 0.0688 (RM333, RM3744) to 0.8854 (RM251) with an average of 0.3940. Rice genotypes were shared between five Groups based on their similarity with majority of them (64.81%) under Group V. Variety SK 7-8 within Group III was highly dissimilar to other varieties. Malian varieties were shared out between Groups II, III, VI and V. Strong genetic variability was observed within cluster V2 of Group V among the most cultivated and appreciated rice varieties such as Kogoni 91-1, Adny11 and BG90-2. Allelic variability observed among rice varieties could help breeding programs to identify cultivars with good agronomic traits for crop improvement.},
year = {2018}
}
TY - JOUR T1 - Genetic Variability Assessment in Irrigated Rice (Oryza sativa and Oryza glaberrima) by PCR-SSR in Mali AU - Sognan Dao AU - Halimatou Timbine AU - Oumarou Goita AU - Diakaridia Traore Y1 - 2018/05/22 PY - 2018 N1 - https://doi.org/10.11648/j.ijgg.20180602.11 DO - 10.11648/j.ijgg.20180602.11 T2 - International Journal of Genetics and Genomics JF - International Journal of Genetics and Genomics JO - International Journal of Genetics and Genomics SP - 22 EP - 29 PB - Science Publishing Group SN - 2376-7359 UR - https://doi.org/10.11648/j.ijgg.20180602.11 AB - Rice species (Oryza sativa, L. and Oryza glaberrima, Steud) provide 20% energy of world’s food. Knowledge of genetic variability is important to remove duplicate materials for gene bank management and conservation. In this study, 59 microsatellite markers were used to assess the genetic diversity of 54 intraspecific (Oryza sativa) and interspecific (Oryza sativa X Oryza glaberrima) irrigated rice varieties by PCR-SSR. A total of 250 alleles were detected with an average of 4.24 alleles per SSR. Genetic diversity was ranged from 0.0713 (RM333, RM3744) to 0.8937 (RM251) to with an average of 0.4325. Polymorphism Information Content (PIC) varied from 0.0688 (RM333, RM3744) to 0.8854 (RM251) with an average of 0.3940. Rice genotypes were shared between five Groups based on their similarity with majority of them (64.81%) under Group V. Variety SK 7-8 within Group III was highly dissimilar to other varieties. Malian varieties were shared out between Groups II, III, VI and V. Strong genetic variability was observed within cluster V2 of Group V among the most cultivated and appreciated rice varieties such as Kogoni 91-1, Adny11 and BG90-2. Allelic variability observed among rice varieties could help breeding programs to identify cultivars with good agronomic traits for crop improvement. VL - 6 IS - 2 ER -
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