A Method of Building 3D Vector Model for Plant Root
Science Discovery
Volume 5, Issue 5, October 2017, Pages: 340-347
Received: Aug. 7, 2017; Published: Aug. 7, 2017
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Chen Fuqiang, College of Engineering, South China Agricultural University, Guangzhou City, China
Zhou Xuecheng, College of Engineering, South China Agricultural University, Guangzhou City, China; South Agricultural Machinery and Equipment Key Lab of Ministry of Education, Guangzhou City, China
Yang Zishang, College of Engineering, South China Agricultural University, Guangzhou City, China
Wang Gaofeng, College of Engineering, South China Agricultural University, Guangzhou City, China
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In order to achieve quantitative description and analysis of root architecture, a 3D vector model building method for plant root was proposed. Firstly, three data structures of root node, root branch and root system are designed. Secondly, according to the linear characteristic of root, the root skeleton points are extracted by the slice algorithm. Then, branch topological relations is established by using the path planning algorithm based on connectivity. Finally, the attribute parameters (radius, area, circumference, etc.) of the skeleton points are extracted by the method of branch slice. The results of the vector model are preserved in the three data structures of the root system, and the three-dimensional phenotypic detection of the root system is carried out using the model data. Through the analysis of the phenotypic test results, and compared with the manual measurement results, the verification of the proposed method of the feasibility and accuracy.
Plant Root, Vector Model, Phenotypic Parameters
To cite this article
Chen Fuqiang, Zhou Xuecheng, Yang Zishang, Wang Gaofeng, A Method of Building 3D Vector Model for Plant Root, Science Discovery. Vol. 5, No. 5, 2017, pp. 340-347. doi: 10.11648/j.sd.20170505.17
Clark, Randy T, Mac Curdy, Robert B, Jung,Janelle K, et al. Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform [J]. PLANT PHYSIOLOGY. 2011, 156(2):455-465.
Stefan Mairhofer,Saoirse R. Tracy, et al. RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking [J]. PLANT PHYSIOLOGY, 2012, 158(2):561-569.
DD Van, R Metzner, J Kochs, JA Postma, D Pflugfelder et al. Quantitative 3D Analysis of Plant Roots Growing in Soil Using Magnetic Resonance Imaging [J]. Plant Physiology, 2016, 170(3):1176-1188.
Heeraman D A, Hopmans J W, Clausnitzer V. Three dimensional imaging of plant roots in situ with X-Ray computed tomography [J]. Plant and Soil, 1997, 189(2):167-179.
Kuijken R C, van Eeuwijk F A, Marcelis L F, et al. Root phenotyping: from component trait in the lab to breeding [J]. Journal of Experimental Botany, 2015, 66(18): 5389-5401.
李骈臻,周学成,张常玲,等.基于骨架模型的植物根系三维构型可视化方法[J]. 计算机工程与设计,2014, 35(11):3913-3917。
Metzner Ralf, Eggert Anja, van Dusschoten, Dagmar et al. Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification [J]. Plant Methods, 2015, 11(1):17.
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