American Journal of Agriculture and Forestry

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Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae

Received: 29 August 2019    Accepted: 16 September 2019    Published: 23 September 2019
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Abstract

In order to quickly identify Magnoliaceae plants and scientifically correct the misidentification of the samples of chloroplast complete genomes in the NCBI (National Center for Biotechnology Information, USA) database, total 260 samples of Magnoliaceae, 196 of Yulania Spach, 40 of Magnolia L., 19 of Michelia L., and 5 of Liriodendron L. were collected and the partial sequences of matK gene were amplified and sequenced respectively. The results indicated that there are two particular loci in the partial sequences, matK (...AAGNAATGATTGTATAA...CCAAAAATMGACAAGGTG...) (N = A, G; M = A, G, T) of Magnoliaceae, which can be used to identify the family because they are not possessed by other families. They are also PEL (particularly evolutionary loci) of genera of Magnoliaceae, which can be used to quickly identify the genera of the family, for all samples of the genus of Yulania Spach with the loci of matK (...AAGGAATGATTGTATAA...CCAAAAATAGACAAGGTG...), all samples of Magnolia L. with matK (...AAGGAATGATTGTATAA...CCAAAAATGGACAAGGTG...), all samples of Michelia L. with matK (...AAGAAATGATTGTATAA...CCAAAAATGGACAAGGTG...), and all samples of Liriodendron L. with matK (...AAGGAATGATTGTATAA....CCAAAAATTGACAAGGTG...). So, In four genera of Magnoliaceae, Yulania Spach, Michelia L. and Liriodendron L. have the respective PEL, and Magnolia L. can also be easily identified for having the oppositely evolutionary loci of other 3 genera. Based on the two PEL, the misidentified samples of chloroplast complete genome in NCBI were listed, which included 11 samples of Yulania Spach and 3 samples of Michelia L.. Being simple and reliable, PEL is a scientific method to identify the evolutionary taxa, which can effectively overcome the limitations of being partial and subjective in Taxonomy and Phylogeny.

DOI 10.11648/j.ajaf.20190705.18
Published in American Journal of Agriculture and Forestry (Volume 7, Issue 5, September 2019)

This article belongs to the Special Issue The New Evolutionary Theory & Practice

Page(s) 224-228
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2024. Published by Science Publishing Group

Keywords

PEL (Particularly Evolutionary Loci), matK, Genera, Magnoliaceae, Evolutionomy

References
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[3] Agendae ASE (ed.). “Flora Reipublicae Popularis Sinicae”, Tomus 30 (1). Beijing: Science Press, pp. 126-141. 1996.
[4] D. Hunt. “Magnolias and their allies”. Sherborne: International Dendrology Society and The Magnolia Society, pp. 104-126, 1998.
[5] Y. H. Liu. “Magnolias of China”. Beijing: Science Press, 44-55, 2004.
[6] D. L. Fu. “Notes on Yulania Spach”. Journal of Wuhan Botanical Research, vol. 19, no. 3, pp. 191-198, 2001.
[7] Z. Y. Wu, A. M. Lu, C. Y. Tang, Z. D. Chen, D. Z. Li. “A generality on the families and genera of Angiosperms in China”. Beijing: Science Press, pp. 62-64, 2003.
[8] KIB (Kunming Institute of Botany). “Flora Yunnanica”. vol 16. Beijing: Science Press, pp. 25-30, 2006.
[9] G. H. Tian, D. L. Fu, D. W. Zhao, J. Zhao, T. B. Zhao. “Study on the Species Resources and New Classification System of Yulania Spach”. Chinese Agricultural Science Bulletin, vol.22, no. 5, pp. 404-411. 2006.
[10] N. H. Xia, Y. H. Liu, H. P. Nooteboom. “Magnoliaceae”. In: Wu Z Y, P. H. Raven, Hong D Y. “Flora of China”, Beijing: Science Press & St. Louis, MO: Missouri Botanical Garden Press, vol. 7, pp. 71-77, 2008.
[11] N. H. Xia. “A New classification System of the Family Magnoliaceae”. In: Xia N H, Zheng Q W, Xu F X, Wu Q G. Proceedings of the Second International Symposium on the Family Magnoliaceae. Wuhan: Huazhong University of Science & Technology Press. pp. 12-38, 2009.
[12] T. B. Zhao, G. H. Tian, D. L. Fu, and D. X. Zhao. “Shijie Yulanshu Zhiwu Ziyuan yu Zaipei Liyong”. Beijing: Science Press, pp. 179-383, 2013. [in Chinese].
[13] T. B. Zhao, Z. F. Ren, and G. H. Tian. “Shijie Yulanshu Zhiwu Zhongzhi Ziyuan Zhi”. Zhengzhou: Yellow River Conservancy Press, pp. 1-153, 2013. [in Chinese].
[14] T. B. Zhao, L. H. Song, G. H. Tian, and Z. X. Chen. “Henan Yulan Zaipei”. Zhengzhou: Yellow River Conservancy Press, 138-310, 2015. [in Chinese].
[15] D. L. Fu and H. Fu. “An evolutionary continuity principle for evolutionary system of organism divisions”. American Journal of Agriculture and Forestry, vol. 6, no. 3, pp. 60-64, 2018. DOI: 10.11648/j.ajaf.20180603.14.
[16] N. Li., W. Huang, Q. Shi, Y. Zhang, and L. Song. “A CTAB-assisted hydrothermal synthesis of VO2 (B) nanostructures for lithium-ion battery application”. Ceram. Int. vol. 39, pp. 6199–6206, 2013. DOI: 10.1016/j.ceramint.2013.01.039.
Author Information
  • Non-timber Forestry Research and Development Center, Chinese Academy of Forestry, Zhengzhou, China; Key Laboratory of Non-timber Forest Germplasm Enhancement & Utilization of National Forestry and Grassland Administration, Zhengzhou, China

  • Non-timber Forestry Research and Development Center, Chinese Academy of Forestry, Zhengzhou, China; Key Laboratory of Non-timber Forest Germplasm Enhancement & Utilization of National Forestry and Grassland Administration, Zhengzhou, China

  • Non-timber Forestry Research and Development Center, Chinese Academy of Forestry, Zhengzhou, China; Key Laboratory of Non-timber Forest Germplasm Enhancement & Utilization of National Forestry and Grassland Administration, Zhengzhou, China

  • Experimental Center of Tropical Forestry, Chinese Academy of Forestry, Pingxiang, China

  • General Station of Forest and Grassland Pest Control of National Forestry and Grassland Administration, Shenyang, China

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    Da-Li Fu, Yue Qin, Dao-Shun Zhou, Run-Mei Duan, Hao Fu. (2019). Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae. American Journal of Agriculture and Forestry, 7(5), 224-228. https://doi.org/10.11648/j.ajaf.20190705.18

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    Da-Li Fu; Yue Qin; Dao-Shun Zhou; Run-Mei Duan; Hao Fu. Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae. Am. J. Agric. For. 2019, 7(5), 224-228. doi: 10.11648/j.ajaf.20190705.18

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    AMA Style

    Da-Li Fu, Yue Qin, Dao-Shun Zhou, Run-Mei Duan, Hao Fu. Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae. Am J Agric For. 2019;7(5):224-228. doi: 10.11648/j.ajaf.20190705.18

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  • @article{10.11648/j.ajaf.20190705.18,
      author = {Da-Li Fu and Yue Qin and Dao-Shun Zhou and Run-Mei Duan and Hao Fu},
      title = {Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae},
      journal = {American Journal of Agriculture and Forestry},
      volume = {7},
      number = {5},
      pages = {224-228},
      doi = {10.11648/j.ajaf.20190705.18},
      url = {https://doi.org/10.11648/j.ajaf.20190705.18},
      eprint = {https://download.sciencepg.com/pdf/10.11648.j.ajaf.20190705.18},
      abstract = {In order to quickly identify Magnoliaceae plants and scientifically correct the misidentification of the samples of chloroplast complete genomes in the NCBI (National Center for Biotechnology Information, USA) database, total 260 samples of Magnoliaceae, 196 of Yulania Spach, 40 of Magnolia L., 19 of Michelia L., and 5 of Liriodendron L. were collected and the partial sequences of matK gene were amplified and sequenced respectively. The results indicated that there are two particular loci in the partial sequences, matK (...AAGNAATGATTGTATAA...CCAAAAATMGACAAGGTG...) (N = A, G; M = A, G, T) of Magnoliaceae, which can be used to identify the family because they are not possessed by other families. They are also PEL (particularly evolutionary loci) of genera of Magnoliaceae, which can be used to quickly identify the genera of the family, for all samples of the genus of Yulania Spach with the loci of matK (...AAGGAATGATTGTATAA...CCAAAAATAGACAAGGTG...), all samples of Magnolia L. with matK (...AAGGAATGATTGTATAA...CCAAAAATGGACAAGGTG...), all samples of Michelia L. with matK (...AAGAAATGATTGTATAA...CCAAAAATGGACAAGGTG...), and all samples of Liriodendron L. with matK (...AAGGAATGATTGTATAA....CCAAAAATTGACAAGGTG...). So, In four genera of Magnoliaceae, Yulania Spach, Michelia L. and Liriodendron L. have the respective PEL, and Magnolia L. can also be easily identified for having the oppositely evolutionary loci of other 3 genera. Based on the two PEL, the misidentified samples of chloroplast complete genome in NCBI were listed, which included 11 samples of Yulania Spach and 3 samples of Michelia L.. Being simple and reliable, PEL is a scientific method to identify the evolutionary taxa, which can effectively overcome the limitations of being partial and subjective in Taxonomy and Phylogeny.},
     year = {2019}
    }
    

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  • TY  - JOUR
    T1  - Two Particularly Evolutionary Loci of matK of cpDNA of Genera of Magnoliaceae
    AU  - Da-Li Fu
    AU  - Yue Qin
    AU  - Dao-Shun Zhou
    AU  - Run-Mei Duan
    AU  - Hao Fu
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    N1  - https://doi.org/10.11648/j.ajaf.20190705.18
    DO  - 10.11648/j.ajaf.20190705.18
    T2  - American Journal of Agriculture and Forestry
    JF  - American Journal of Agriculture and Forestry
    JO  - American Journal of Agriculture and Forestry
    SP  - 224
    EP  - 228
    PB  - Science Publishing Group
    SN  - 2330-8591
    UR  - https://doi.org/10.11648/j.ajaf.20190705.18
    AB  - In order to quickly identify Magnoliaceae plants and scientifically correct the misidentification of the samples of chloroplast complete genomes in the NCBI (National Center for Biotechnology Information, USA) database, total 260 samples of Magnoliaceae, 196 of Yulania Spach, 40 of Magnolia L., 19 of Michelia L., and 5 of Liriodendron L. were collected and the partial sequences of matK gene were amplified and sequenced respectively. The results indicated that there are two particular loci in the partial sequences, matK (...AAGNAATGATTGTATAA...CCAAAAATMGACAAGGTG...) (N = A, G; M = A, G, T) of Magnoliaceae, which can be used to identify the family because they are not possessed by other families. They are also PEL (particularly evolutionary loci) of genera of Magnoliaceae, which can be used to quickly identify the genera of the family, for all samples of the genus of Yulania Spach with the loci of matK (...AAGGAATGATTGTATAA...CCAAAAATAGACAAGGTG...), all samples of Magnolia L. with matK (...AAGGAATGATTGTATAA...CCAAAAATGGACAAGGTG...), all samples of Michelia L. with matK (...AAGAAATGATTGTATAA...CCAAAAATGGACAAGGTG...), and all samples of Liriodendron L. with matK (...AAGGAATGATTGTATAA....CCAAAAATTGACAAGGTG...). So, In four genera of Magnoliaceae, Yulania Spach, Michelia L. and Liriodendron L. have the respective PEL, and Magnolia L. can also be easily identified for having the oppositely evolutionary loci of other 3 genera. Based on the two PEL, the misidentified samples of chloroplast complete genome in NCBI were listed, which included 11 samples of Yulania Spach and 3 samples of Michelia L.. Being simple and reliable, PEL is a scientific method to identify the evolutionary taxa, which can effectively overcome the limitations of being partial and subjective in Taxonomy and Phylogeny.
    VL  - 7
    IS  - 5
    ER  - 

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