Biochemistry and Molecular Biology

| Peer-Reviewed |

Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton

Received: 19 June 2017    Accepted: 29 June 2017    Published: 31 July 2017
Views:       Downloads:

Share This Article

Abstract

Post-transcriptional modifications of nascent mRNA include 5’ capping, splicing and 3’ end polyadenylation, resulting in the emergence of mature mRNA. Recent findings indicate that mRNA splicing inhibitors can be potential anti-cancer candidates. Soy-isoflavone fractions displayed an inhibitory effect of mRNA processing among a number of dietary components. Two major components of the isoflavone fraction, daidzin and genistin did not have an inhibitory activity against mRNA maturation. The aglycone form of them also failed to inhibit mRNA maturation. Instead, compounds with flavone skeleton inhibited the mRNA maturation in the nucleus. Considering that the structural difference between flavone and isoflavone compounds is that B-ring is attached either on the 2’ or 3’ position of C-ring, respectively, anti-mRNA maturation activity may require a defined structural basis. These data indicate that compounds with flavone skeleton specifically alter the mRNA processing step.

DOI 10.11648/j.bmb.20170204.13
Published in Biochemistry and Molecular Biology (Volume 2, Issue 4, July 2017)
Page(s) 46-53
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2024. Published by Science Publishing Group

Keywords

Flavone, Luciferase Reporter, RNA-FISH

References
[1] Chang, TH, Tung, L, Yeh, FL, et al. Functions of the DExD/H-box proteins in nuclear pre-mRNA splicing, Biochim Biophys Acta. 2013; 1829:764-774.
[2] de Klerk, E, t Hoen, PA. Alternative mRNA transcription, processing, and translation: insights from RNA sequencing, Trends Genet. 2015; 31:128-139.
[3] Guo, J, Price, DH. RNA polymerase II transcription elongation control, Chem Rev. 2013; 113:8583-8603.
[4] Han, J, Xiong, J, Wang, D, et al. Pre-mRNA splicing: where and when in the nucleus, Trends Cell Biol. 2011; 21:336-343.
[5] Wickramasinghe, VO, Laskey, RA. Control of mammalian gene expression by selective mRNA export, Nature reviews. Molecular cell biology. 2015; 16:431-442.
[6] Maniatis, T, Reed, R. An extensive network of coupling among gene expression machines, Nature. 2002;416:499-506.
[7] Naftelberg, S, Schor, IE, Ast, G, et al. Regulation of alternative splicing through coupling with transcription and chromatin structure, Annu Rev Biochem. 2015; 84:165-198.
[8] Saldi, T, Cortazar, MA, Sheridan, RM, et al. Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing, J Mol Biol. 2016; 428:2623-2635.
[9] Liu, YC, Cheng, SC. Functional roles of DExD/H-box RNA helicases in Pre-mRNA splicing, J Biomed Sci. 2015;22:54.
[10] Matera, AG, Wang, Z. A day in the life of the spliceosome, Nature reviews. Molecular cell biology. 2014; 15:108-121.
[11] Misra, A, Green, MR. From polyadenylation to splicing: Dual role for mRNA 3' end formation factors, RNA Biol. 2016; 13:259-264.
[12] Papasaikas, P, Valcarcel, J. The Spliceosome: The Ultimate RNA Chaperone and Sculptor, Trends Biochem Sci. 2016; 41:33-45.
[13] Sperling, J, Azubel, M, Sperling, R. Structure and function of the Pre-mRNA splicing machine, Structure. 2008; 16:1605-1615.
[14] Adamia, S, Pilarski, PM, Bar-Natan, M, et al. Alternative splicing in chronic myeloid leukemia (CML): a novel therapeutic target?, Curr Cancer Drug Targets. 2013; 13:735-748.
[15] Arslan, AD, He, X, Wang, M, et al. A high-throughput assay to identify small-molecule modulators of alternative pre-mRNA splicing, J Biomol Screen. 2013; 18:180-190.
[16] Bakkour, N, Lin, YL, Maire, S, et al. Small-molecule inhibition of HIV pre-mRNA splicing as a novel antiretroviral therapy to overcome drug resistance, PLoS Pathog. 2007; 3:1530-1539.
[17] Daguenet, E, Dujardin, G, Valcarcel, J. The pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches, EMBO Rep. 2015; 16:1640-1655.
[18] Hahn, CN, Venugopal, P, Scott, HS, et al. Splice factor mutations and alternative splicing as drivers of hematopoietic malignancy, Immunol Rev. 2015; 263:257-278.
[19] Le, KQ, Prabhakar, BS, Hong, WJ, et al. Alternative splicing as a biomarker and potential target for drug discovery, Acta Pharmacol Sin. 2015; 36:1212-1218.
[20] Maguire, SL, Leonidou, A, Wai, P, et al. SF3B1 mutations constitute a novel therapeutic target in breast cancer, J Pathol. 2015; 235:571-580.
[21] Nlend Nlend, R, Meyer, K, Schumperli, D. Repair of pre-mRNA splicing: prospects for a therapy for spinal muscular atrophy, RNA Biol. 2010; 7:430-440.
[22] Salton, M, Misteli, T. Small Molecule Modulators of Pre-mRNA Splicing in Cancer Therapy, Trends Mol Med. 2016; 22:28-37.
[23] Folco, EG, Coil, KE, Reed, R. The anti-tumor drug E7107 reveals an essential role for SF3b in remodeling U2 snRNP to expose the branch point-binding region, Genes Dev. 2011; 25:440-444.
[24] Kaida, D, Motoyoshi, H, Tashiro, E, et al. Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA, Nat Chem Biol. 2007; 3:576-583.
[25] Kotake, Y, Sagane, K, Owa, T, et al. Splicing factor SF3b as a target of the antitumor natural product pladienolide, Nat Chem Biol. 2007; 3:570-575.
[26] Hasegawa, M, Miura, T, Kuzuya, K, et al. Identification of SAP155 as the target of GEX1A (Herboxidiene), an antitumor natural product, ACS Chem Biol. 2011; 6:229-233.
[27] O'Brien, K, Matlin, AJ, Lowell, AM, et al. The biflavonoid isoginkgetin is a general inhibitor of Pre-mRNA splicing, J Biol Chem. 2008; 283:33147-33154.
[28] Pilch, B, Allemand, E, Facompre, M, et al. Specific inhibition of serine- and arginine-rich splicing factors phosphorylation, spliceosome assembly, and splicing by the antitumor drug NB-506, Cancer Res. 2001; 61:6876-6884.
[29] Tazi, J, Bakkour, N, Soret, J, et al. Selective inhibition of topoisomerase I and various steps of spliceosome assembly by diospyrin derivatives, Mol Pharmacol. 2005; 67:1186-1194.
[30] Ting, CY, Hsu, CT, Hsu, HT, et al. Isodiospyrin as a novel human DNA topoisomerase I inhibitor, Biochem Pharmacol. 2003; 66:1981-1991.
[31] Muraki, M, Ohkawara, B, Hosoya, T, et al. Manipulation of alternative splicing by a newly developed inhibitor of Clks, J Biol Chem. 2004; 279:24246-24254.
[32] Soret, J, Bakkour, N, Maire, S, et al. Selective modification of alternative splicing by indole derivatives that target serine-arginine-rich protein splicing factors, Proc Natl Acad Sci U S A. 2005; 102:8764-8769.
[33] Baur, JA, Sinclair, DA. Therapeutic potential of resveratrol: the in vivo evidence, Nat Rev Drug Discov. 2006; 5:493-506.
[34] Markus, MA, Marques, FZ, Morris, BJ. Resveratrol, by modulating RNA processing factor levels, can influence the alternative splicing of pre-mRNAs, PLoS One. 2011; 6:e28926.
[35] Fujita, K, Okamura, M, Nishimoto, S, et al. Establishment of a monitoring system to detect inhibition of mRNA processing, Biosci Biotechnol Biochem. 2012; 76:1248-1251.
[36] Kurata, M, Murata, Y, Momma, K, et al. The isoflavone fraction from soybean presents the mRNA maturation inhibition activity., Biosci Biotechnol Biochem. 2017; 81:551-554.
[37] Fujiwara, N, Yoshikawa, M, Yamazaki, T, et al. A screening method tuned for mRNA processing factors in human cells by evaluation of the luciferase reporter activity and the subcellular distribution of bulk poly (A)+ RNA, Biosci Biotechnol Biochem. 2010; 74:1512-1516.
[38] Masuda, S, Das, R, Cheng, H, et al. Recruitment of the human TREX complex to mRNA during splicing, Genes Dev. 2005; 19:1512-1517.
[39] Yamazaki, T, Fujiwara, N, Yukinaga, H, et al. The closely related RNA helicases, UAP56 and URH49, preferentially form distinct mRNA export machineries and coordinately regulate mitotic progression, Mol Biol Cell. 2010; 21:2953-2965.
[40] Kai, M, Yamauchi, A, Tominaga, K, et al. Soybean isoflavones eliminate nifedipine-induced flushing of tail skin in ovariectomized mice, J Pharmacol Sci. 2004; 95:476-478.
[41] Schwartz, TU. The Structure Inventory of the Nuclear Pore Complex, J Mol Biol. 2016; 428:1986-2000.
[42] Knockenhauer, KE, Schwartz, TU. The Nuclear Pore Complex as a Flexible and Dynamic Gate, Cell. 2016; 164:1162-1171.
[43] von Appen, A, Beck, M. Structure Determination of the Nuclear Pore Complex with Three-Dimensional Cryo electron Microscopy, J Mol Biol. 2016; 428:2001-2010.
[44] Hurt, E, Beck, M. Towards understanding nuclear pore complex architecture and dynamics in the age of integrative structural analysis, Curr Opin Cell Biol. 2015; 34:31-38.
[45] Kabachinski, G, Schwartz, TU. The nuclear pore complex--structure and function at a glance, J Cell Sci. 2015; 128:423-429.
[46] Ptak, C, Aitchison, JD, Wozniak, RW. The multifunctional nuclear pore complex: a platform for controlling gene expression, Curr Opin Cell Biol. 2014; 28:46-53.
[47] Grossman, E, Medalia, O, Zwerger, M. Functional architecture of the nuclear pore complex, Annu Rev Biophys. 2012; 41:557-584.
[48] Raices, M, D'Angelo, MA. Nuclear pore complex composition: a new regulator of tissue-specific and developmental functions, Nature reviews. Molecular cell biology. 2012; 13:687-699.
[49] Hoelz, A, Debler, EW, Blobel, G. The structure of the nuclear pore complex, Annu Rev Biochem. 2011; 80:613-643.
Cite This Article
  • APA Style

    Masashi Kurata, Mari Morimoto, Yuko Kawamura, Intisar Fouad Ali Mursi, Keiko Momma, et al. (2017). Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton. Biochemistry and Molecular Biology, 2(4), 46-53. https://doi.org/10.11648/j.bmb.20170204.13

    Copy | Download

    ACS Style

    Masashi Kurata; Mari Morimoto; Yuko Kawamura; Intisar Fouad Ali Mursi; Keiko Momma, et al. Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton. Biochem. Mol. Biol. 2017, 2(4), 46-53. doi: 10.11648/j.bmb.20170204.13

    Copy | Download

    AMA Style

    Masashi Kurata, Mari Morimoto, Yuko Kawamura, Intisar Fouad Ali Mursi, Keiko Momma, et al. Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton. Biochem Mol Biol. 2017;2(4):46-53. doi: 10.11648/j.bmb.20170204.13

    Copy | Download

  • @article{10.11648/j.bmb.20170204.13,
      author = {Masashi Kurata and Mari Morimoto and Yuko Kawamura and Intisar Fouad Ali Mursi and Keiko Momma and Masakazu Takahashi and Yusaku Miyamae and Taiho Kambe and Masaya Nagao and Hiroshi Narita and Yasuyuki Shibuya and Seiji Masuda},
      title = {Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton},
      journal = {Biochemistry and Molecular Biology},
      volume = {2},
      number = {4},
      pages = {46-53},
      doi = {10.11648/j.bmb.20170204.13},
      url = {https://doi.org/10.11648/j.bmb.20170204.13},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.bmb.20170204.13},
      abstract = {Post-transcriptional modifications of nascent mRNA include 5’ capping, splicing and 3’ end polyadenylation, resulting in the emergence of mature mRNA. Recent findings indicate that mRNA splicing inhibitors can be potential anti-cancer candidates. Soy-isoflavone fractions displayed an inhibitory effect of mRNA processing among a number of dietary components. Two major components of the isoflavone fraction, daidzin and genistin did not have an inhibitory activity against mRNA maturation. The aglycone form of them also failed to inhibit mRNA maturation. Instead, compounds with flavone skeleton inhibited the mRNA maturation in the nucleus. Considering that the structural difference between flavone and isoflavone compounds is that B-ring is attached either on the 2’ or 3’ position of C-ring, respectively, anti-mRNA maturation activity may require a defined structural basis. These data indicate that compounds with flavone skeleton specifically alter the mRNA processing step.},
     year = {2017}
    }
    

    Copy | Download

  • TY  - JOUR
    T1  - Inhibition of mRNA Maturation by Compounds Which Have a Flavonoid Skeleton
    AU  - Masashi Kurata
    AU  - Mari Morimoto
    AU  - Yuko Kawamura
    AU  - Intisar Fouad Ali Mursi
    AU  - Keiko Momma
    AU  - Masakazu Takahashi
    AU  - Yusaku Miyamae
    AU  - Taiho Kambe
    AU  - Masaya Nagao
    AU  - Hiroshi Narita
    AU  - Yasuyuki Shibuya
    AU  - Seiji Masuda
    Y1  - 2017/07/31
    PY  - 2017
    N1  - https://doi.org/10.11648/j.bmb.20170204.13
    DO  - 10.11648/j.bmb.20170204.13
    T2  - Biochemistry and Molecular Biology
    JF  - Biochemistry and Molecular Biology
    JO  - Biochemistry and Molecular Biology
    SP  - 46
    EP  - 53
    PB  - Science Publishing Group
    SN  - 2575-5048
    UR  - https://doi.org/10.11648/j.bmb.20170204.13
    AB  - Post-transcriptional modifications of nascent mRNA include 5’ capping, splicing and 3’ end polyadenylation, resulting in the emergence of mature mRNA. Recent findings indicate that mRNA splicing inhibitors can be potential anti-cancer candidates. Soy-isoflavone fractions displayed an inhibitory effect of mRNA processing among a number of dietary components. Two major components of the isoflavone fraction, daidzin and genistin did not have an inhibitory activity against mRNA maturation. The aglycone form of them also failed to inhibit mRNA maturation. Instead, compounds with flavone skeleton inhibited the mRNA maturation in the nucleus. Considering that the structural difference between flavone and isoflavone compounds is that B-ring is attached either on the 2’ or 3’ position of C-ring, respectively, anti-mRNA maturation activity may require a defined structural basis. These data indicate that compounds with flavone skeleton specifically alter the mRNA processing step.
    VL  - 2
    IS  - 4
    ER  - 

    Copy | Download

Author Information
  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan; Department of Oral and Maxillofacial Surgery, Graduate School of Medical Sciences, Nagoya City University, Nagoya, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Department of Food and Nutrition, Kyoto Women’s University, Kyoto, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Department of Living and Welfare, Kyoto Women’s University, Kyoto, Japan

  • Department of Bioscience, Fukui Prefectural University, Fukui, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Department of Food and Nutrition, Kyoto Women’s University, Kyoto, Japan

  • Department of Oral and Maxillofacial Surgery, Graduate School of Medical Sciences, Nagoya City University, Nagoya, Japan

  • Division of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Japan

  • Sections