| Peer-Reviewed

Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria

Received: 14 June 2018    Accepted: 7 August 2018    Published: 11 March 2019
Views:       Downloads:
Abstract

Biodegradation of crude oil-polluted soils by bacterial isolates was carried out experimentally, to determine the ability of bacterial isolate to utilize and detoxify crude oil-polluted soils. Three soil samples were collected from crude oil-polluted sites of Owazangboko, Abia State, Aguleri-otu, Anambra State and Obi-igbo, Rivers State, Nigeria. Microbiological analysis and physico-chemical analysis were carried out in the Microbiology Laboratory of Chukwuemeka Odumegwu Ojukwu University, Uli. Physico-chemical analysis was carried out to determine the pH, moisture content, water holding capacity and total organic carbon of the soil samples. Microbiological analysis was carried out using serial dilution and spread plate methods to determine the total viable count, enumeration of hydrocarbon utilizing bacteria (HUB) was done using vapour phase method on mineral salt agar monitored at the wavelength of 600nm for 5 days. Adaptation test was carried out and monitored for 5 days using mineral salt broth containing 1ml and 2ml of sterile crude oil separately. A consortium of six effective isolates was taken for the biodegradation of the crude oil, which was monitored for 14 days. Biochemical tests were carried out on the isolates. Polymerase chain reaction (PCR) technique was used to confirm the identity of the isolates. Gas chromatographic flame ionization detector (GC-FID) was used to monitor the amount of the residual total petroleum hydrocarbon after the biodegradation study. Results of physic-chemical analysis showed; pH value of 3.7– 6.6, moisture content 1.6 – 4.4., water holding capacity 28.0 – 32.0., total organic carbon 3.4 – 7.1. Results of total viable count were in the range of 7.1×106 - 5.9×1010. Results of vapour phase method ranged from 0.16 – 0.66. Adaptability test revealed values, 0.11 – 0.54. Biochemical test results revealed Bacillus spp., Pseudomonas spp., Serratia spp., Micrococcus spp., Arthrobacter spp., Proteus spp., Shigella spp. PCR results gave the identity of the organisms to be Lysinibacillus spp. M2c, Serratia marcescens Mb4, Bacillus aerius TPM-23, Proteus mirabilis LS-3 and a new unidentified bacterium. TPH concentrations were in the range of 582.67 mg/l – 123.67 mg/l for Lysinibacillus spp. M2c and Serratia marcescens Mb4, 682.65 – 203.85 mg/l for Bacillus aerius TPM-23and 753.32 mg/l – 324.77 mg/l for Proteus mirabilis LS-3 and the new unidentified bacterium. The effect of bacterial growth across the days showed a p-value of 0.000 less than the α-value 0.01, this concluded that the growth of the bacteria across the days was significant for both vapour phase test and adaptability test. From this study it is evident that Serratia marcescens Mb4 and Lysinibacillus spp. M2c could be used to effectively treat crude oil-polluted environment.

Published in Frontiers in Environmental Microbiology (Volume 5, Issue 1)
DOI 10.11648/j.fem.20190501.13
Page(s) 14-28
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2024. Published by Science Publishing Group

Keywords

Crude Oil, Soil, Microbiological, Physico-Chemical, Biodegradation, PCR, Gas Chromatographic

References
[1] Abdel-Megeed, A, Al-Hardi, N. and Al-Deyad, S. (2010). Hexadecane degradation by bacterial strains isolated from contaminated soils. African Journal of Biotechnology44: 1684–5315.
[2] Amu, L. A. O. (2006). A Review of Nigeria’s Petroleum Industry. NNPC, Lagos. Department of Petroleum Resources (DPR), Annual Reports, Abuja, Brest, France. pp. 191.
[3] Ayotamuno, M. J., Kogbara, R. B., Ogaji, S. O. T and Probert, S. D. (2006). Bioremediation of a crude oil polluted agricultural-soil at Port Harcourt, Nigeria. Applied Energy83: 1249–1257.
[4] Bundy, J. G., Paton, G. I. and Campell, C. D. (2004). Microbial communities in different soil types do not converge after diesel contamination. Journal of Applied Microbiology 92 (2) 88–276.
[5] Cheesbrough, M (2000). Biochemical testing of Microorganisms in: Medical Laboratory Manual for Tropical Countries. Vol 11: Microbiology. Cambridge University Press, Pp 58–69.
[6] Chikere, B. O. and Okpokwasili, G. C. (2003). Enhancement of biodegradation of petrochemicals by nutrient supplementation. Nigerian Journal of Microbiology 17 (2): 130–135.
[7] Chikere, C. B., Okpokwasili and Ichlakor, O. (2009). Characterization of hydrocarbon utilizing bacteria in tropical marine sediments. African journal of Biotechnology 8: (11) 2541–2544.
[8] Diplock, E. E., Mardlin, D. P., Killham, K. S. and Paton, G. I. (2009). Predicting bioremediation of hydrocarbons: Laboratory to field scale. Environmental Pollution157: 1831–1840.
[9] Ekhaise, F. O and Nkwelle, J. (2011). Microbiological and physicochemical Analyses of oil contaminated soil from major motor mechanic workshop in Benin city metropolis, Edo State, Nigeria. Journal of Applied Science 15(4): 597–600.
[10] Ekpo, M. A. and Ekpo, E. I. (2006). Utilization of Bonny light and Bonny Medium crude oil by microorganisms isolated from Qua Iboe River Estuarine. Nigerian Journal of Microbiology 20(1): 832–839.
[11] Gargouri, B., Karray, F., Mhiri, N., Aloui, F., and Sayadi, S. (2011). Application of a continuously stirred tank bioreactor (CSTR) for bioremediation of hydrocarbon-rich industrial wastewater effluents. Journal of Hazardous Materials. 189: 427–434.
[12] Ichor, T, Okerentugba, P. O and Okpokwasili, G. C, (2016). Biodegradation of total petroleum hydrocarbon by a consortium of cyanobacteria Isolated from crude oil polluted brackish water of bodo creeks in Ogoniland, Rivers State. Research Journal of Environmental Toxicology10: 16–27.
[13] Ite, A. E., and Ibok, U. J. (2013). Gas Flaring and Venting Associated with Petroleum Exploration and Production in the Nigeria’s Niger Delta. American Journal of Environmental Protection. 1(4). 70–77.
[14] Iturbe, R., Castro, A., Perez, G., Flores, C. and Torres, L. G. (2008). TPH and PAH concentrations in the subsoil of polyduct segments, oil pipelines pumping stations and right of way pipelines from central mexico. Environmental Geology. 55: 1785–1795.
[15] Iyalla, T. M., (2001). Environmental and hydrogeological mapping; a requirement for the Niger Delta development planning. Technical paper presented at the Nigerian Society of Engineers’Techincal Session, Port Harcourt, April 12th.
[16] Kampa, M., and Castanas, E. (2008). Human health effects of air pollution. Environmental pollution. 151(2). 362–367.
[17] Kaplan, C. W. and Kitts, C. L. (2004). Bacterial succession in a petroleum land treatment unit. Applied Environmental Microbiology. 70: 1777–1786.
[18] Kawo, A. H. and Bacha, H. Y. (2016). Crude oil degradation by Bacillus and Micrococcus spp. Isolated from soil compost in Kano, Nigeria. Bayero Journal of Pure and Applied Sciences. 9 (1) 108–117.
[19] Kermanshahi, A. P., Karamanev, D. and Margaritis, A. (2005). Biodegradation of petroleum hydrocarbons in an immobilized cell airlift bioreactor. Water Research. 39: 3704–3714.
[20] Kharaka, Y. K., Hanor, J. S., Heinrich, D. H. and Karl, K. T. (2007). Deep fluids in the continents: I. Sedimentary Basins, Treatise on Geochemistry, Oxford: Pergamon. pp 1–48.
[21] Lin, T. C., Pan, P. T. and Cheng, S. S. (2010). Ex-situ bioremediation of oil-contaminated soil. Journal of Hazardous Materials. 176: 27–34.
[22] Margesin, R., Labbé, D., Schinner, F., Greer, C. W. and Whyte, L. G. (2003). Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soil. Applied and Environmental Microbiology. 69: 3085–3092.
[23] Mmom, P. C. (2003). The Niger Delta: A Spatial Perspective to its Development. Zelon Enterprises. Port Harcourt.
[24] Musliu A. and Salawudeen W. (2012). Screening and Isolation of the Soil Bacteria for Ability to Produce Antibiotics. European Journal of Applied Sciences. 4: 211–215.
[25] Ogri, O. R. (2001). A review of the Nigerian Petroleum Industry and the Associated Environmental Problems. The Environmentalist. 21 (1) 11–21.
[26] Ojumu, T. V., Yu, J and Solomon, B. O. (2004). Production of Polyhydroxyalkanoates, a bacterial biodegradable polymer. African Journal of Biotechnology. 3:18–24.
[27] Omotayo, A. E, Efetie, O. A. Oyetibo, G, Ilori, M. O. and Amund, O. O, (2011). Degradation of aviation fuel by microorganism isolated from tropical polluted soils. International Journal of Biological and Chemical Scicence. 5 (2): 698–708.
[28] Onifade, A. K, and Abubakar, F. A. (2007). Characterization of Hydrocarbon-degrading microorganism isolated from crude oil contaminated soil and remediation of the soil by enhanced natural attenuation. Research Journal of Microbiology. 2 (2): 149–155.
[29] Onuoha, S. C. (2013). Stimulated Biodegradation of Spent Lubricating Motor oil in Soil Amended with Animal droppings. Journal of Natural Science Research. 3 (12) 2224–3186.
[30] Onyeike, E. N. and Osuji, J. O. (2003). Research Techniques in Biological and Chemical Services. Spring field publishers, Ltd. Imo. Pp. 321–327.
[31] Otitoloju, A. A., Are, T. and Junaid, K. A. (2007). Recovery assessment of a refined oil impacted and fire ravaged mangrove ecosystem. Environmental Monitoring Assessment. 127: 353–362.
[32] Paton, G. I., Killham, K., Weitz, H. J. and Semple, K. T. (2005). Biological tools for the assessment of contaminated land. Applied Soil Ecotoxicology. 21: 487–499.
[33] Radwan, S. S., Al-Mailem, D., El-Nemr, I and Salamah, S. (2002). Enhanced remediation of hydrocarbon contaminated desert soil fertilized with organic carbons. International Biodeterioration and Biodegradation. 46: 129–132.
[34] Scheren, P. A., Ibe, A. C.; Janssen, F. J. and Lemmens, A. M. (2002). Environmental pollution in the Gulf of Guinea regional approach, Marine Pollution Bulletin. 44 (7). 633–641.
[35] Sojinu, O. S. S., Wang, J., Sonibare, O. O., and Zang, E. Y. (2010). Polycyclic aromatic hydrocarbons in sediments and soil from oil exploration areas of the Niger Delta, Nigeria. Journal of Hazardous Materials. 174: 641–647.
[36] Stroud, J. L., Paton, G. I., Semple, K. T. (2007). Microbe aliphatic hydrocarbon interactions in soil; implications for biodegradation and bioremediation. Journal of Applied Microbiology. 102: 1239–1253.
[37] Twumasi, Y. and Merem, E. (2006). GIS and remote sensing applications in the assessment of change within a coastal environment in the Niger Delta region of Nigeria. International Journal of Environmental Research and Public Health. 3(1): 98-106.
[38] Umeaku, C. N., Nwadukwe, K. A., Emmyegbe, I. O. and Opara, M. F. (2014). Microorganisms involved in rhizoremediation of crude oil-polluted soils. Free contribution 104. OWSD. Fifth international conference. Woman in science in a quest for sustainability and development. 17-20 September. Mexico.
[39] Umeaku, C. N. (2008). Biochemical Testing of Microorganisms in: Laboratory Practice for Tertiary Institutions. Odus Press, Enugu. ISBN 978-38379-7-4
[40] Worgu, S. O., (2000). Hydrocarbon Exploitation, Environmental Degradation and Poverty in the Niger Delta Region of Nigeria. Sweden Lund University Lumes Programme. pp 221.
[41] Wood, T. A. (2005). Remediation methods for contaminated sites. Journal of Environmental Studies, 2: 126–129.
Cite This Article
  • APA Style

    Umeaku Chinyelu Nkiru, Emmy-egbe Ifeyinwa Orsla, Ukoha Chinwe Clarice, Ezenwa Somadina Emmanuel, Chris-Umeaku Chiamaka Ijeoma. (2019). Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria. Frontiers in Environmental Microbiology, 5(1), 14-28. https://doi.org/10.11648/j.fem.20190501.13

    Copy | Download

    ACS Style

    Umeaku Chinyelu Nkiru; Emmy-egbe Ifeyinwa Orsla; Ukoha Chinwe Clarice; Ezenwa Somadina Emmanuel; Chris-Umeaku Chiamaka Ijeoma. Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria. Front. Environ. Microbiol. 2019, 5(1), 14-28. doi: 10.11648/j.fem.20190501.13

    Copy | Download

    AMA Style

    Umeaku Chinyelu Nkiru, Emmy-egbe Ifeyinwa Orsla, Ukoha Chinwe Clarice, Ezenwa Somadina Emmanuel, Chris-Umeaku Chiamaka Ijeoma. Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria. Front Environ Microbiol. 2019;5(1):14-28. doi: 10.11648/j.fem.20190501.13

    Copy | Download

  • @article{10.11648/j.fem.20190501.13,
      author = {Umeaku Chinyelu Nkiru and Emmy-egbe Ifeyinwa Orsla and Ukoha Chinwe Clarice and Ezenwa Somadina Emmanuel and Chris-Umeaku Chiamaka Ijeoma},
      title = {Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria},
      journal = {Frontiers in Environmental Microbiology},
      volume = {5},
      number = {1},
      pages = {14-28},
      doi = {10.11648/j.fem.20190501.13},
      url = {https://doi.org/10.11648/j.fem.20190501.13},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.fem.20190501.13},
      abstract = {Biodegradation of crude oil-polluted soils by bacterial isolates was carried out experimentally, to determine the ability of bacterial isolate to utilize and detoxify crude oil-polluted soils. Three soil samples were collected from crude oil-polluted sites of Owazangboko, Abia State, Aguleri-otu, Anambra State and Obi-igbo, Rivers State, Nigeria. Microbiological analysis and physico-chemical analysis were carried out in the Microbiology Laboratory of Chukwuemeka Odumegwu Ojukwu University, Uli. Physico-chemical analysis was carried out to determine the pH, moisture content, water holding capacity and total organic carbon of the soil samples. Microbiological analysis was carried out using serial dilution and spread plate methods to determine the total viable count, enumeration of hydrocarbon utilizing bacteria (HUB) was done using vapour phase method on mineral salt agar monitored at the wavelength of 600nm for 5 days. Adaptation test was carried out and monitored for 5 days using mineral salt broth containing 1ml and 2ml of sterile crude oil separately. A consortium of six effective isolates was taken for the biodegradation of the crude oil, which was monitored for 14 days. Biochemical tests were carried out on the isolates. Polymerase chain reaction (PCR) technique was used to confirm the identity of the isolates. Gas chromatographic flame ionization detector (GC-FID) was used to monitor the amount of the residual total petroleum hydrocarbon after the biodegradation study. Results of physic-chemical analysis showed; pH value of 3.7– 6.6, moisture content 1.6 – 4.4., water holding capacity 28.0 – 32.0., total organic carbon 3.4 – 7.1. Results of total viable count were in the range of 7.1×106 - 5.9×1010. Results of vapour phase method ranged from 0.16 – 0.66. Adaptability test revealed values, 0.11 – 0.54. Biochemical test results revealed Bacillus spp., Pseudomonas spp., Serratia spp., Micrococcus spp., Arthrobacter spp., Proteus spp., Shigella spp. PCR results gave the identity of the organisms to be Lysinibacillus spp. M2c, Serratia marcescens Mb4, Bacillus aerius TPM-23, Proteus mirabilis LS-3 and a new unidentified bacterium. TPH concentrations were in the range of 582.67 mg/l – 123.67 mg/l for Lysinibacillus spp. M2c and Serratia marcescens Mb4, 682.65 – 203.85 mg/l for Bacillus aerius TPM-23and 753.32 mg/l – 324.77 mg/l for Proteus mirabilis LS-3 and the new unidentified bacterium. The effect of bacterial growth across the days showed a p-value of 0.000 less than the α-value 0.01, this concluded that the growth of the bacteria across the days was significant for both vapour phase test and adaptability test. From this study it is evident that Serratia marcescens Mb4 and Lysinibacillus spp. M2c could be used to effectively treat crude oil-polluted environment.},
     year = {2019}
    }
    

    Copy | Download

  • TY  - JOUR
    T1  - Biodegradation of Crude Oil-Polluted Soil by Bacterial Isolates from Nigeria
    AU  - Umeaku Chinyelu Nkiru
    AU  - Emmy-egbe Ifeyinwa Orsla
    AU  - Ukoha Chinwe Clarice
    AU  - Ezenwa Somadina Emmanuel
    AU  - Chris-Umeaku Chiamaka Ijeoma
    Y1  - 2019/03/11
    PY  - 2019
    N1  - https://doi.org/10.11648/j.fem.20190501.13
    DO  - 10.11648/j.fem.20190501.13
    T2  - Frontiers in Environmental Microbiology
    JF  - Frontiers in Environmental Microbiology
    JO  - Frontiers in Environmental Microbiology
    SP  - 14
    EP  - 28
    PB  - Science Publishing Group
    SN  - 2469-8067
    UR  - https://doi.org/10.11648/j.fem.20190501.13
    AB  - Biodegradation of crude oil-polluted soils by bacterial isolates was carried out experimentally, to determine the ability of bacterial isolate to utilize and detoxify crude oil-polluted soils. Three soil samples were collected from crude oil-polluted sites of Owazangboko, Abia State, Aguleri-otu, Anambra State and Obi-igbo, Rivers State, Nigeria. Microbiological analysis and physico-chemical analysis were carried out in the Microbiology Laboratory of Chukwuemeka Odumegwu Ojukwu University, Uli. Physico-chemical analysis was carried out to determine the pH, moisture content, water holding capacity and total organic carbon of the soil samples. Microbiological analysis was carried out using serial dilution and spread plate methods to determine the total viable count, enumeration of hydrocarbon utilizing bacteria (HUB) was done using vapour phase method on mineral salt agar monitored at the wavelength of 600nm for 5 days. Adaptation test was carried out and monitored for 5 days using mineral salt broth containing 1ml and 2ml of sterile crude oil separately. A consortium of six effective isolates was taken for the biodegradation of the crude oil, which was monitored for 14 days. Biochemical tests were carried out on the isolates. Polymerase chain reaction (PCR) technique was used to confirm the identity of the isolates. Gas chromatographic flame ionization detector (GC-FID) was used to monitor the amount of the residual total petroleum hydrocarbon after the biodegradation study. Results of physic-chemical analysis showed; pH value of 3.7– 6.6, moisture content 1.6 – 4.4., water holding capacity 28.0 – 32.0., total organic carbon 3.4 – 7.1. Results of total viable count were in the range of 7.1×106 - 5.9×1010. Results of vapour phase method ranged from 0.16 – 0.66. Adaptability test revealed values, 0.11 – 0.54. Biochemical test results revealed Bacillus spp., Pseudomonas spp., Serratia spp., Micrococcus spp., Arthrobacter spp., Proteus spp., Shigella spp. PCR results gave the identity of the organisms to be Lysinibacillus spp. M2c, Serratia marcescens Mb4, Bacillus aerius TPM-23, Proteus mirabilis LS-3 and a new unidentified bacterium. TPH concentrations were in the range of 582.67 mg/l – 123.67 mg/l for Lysinibacillus spp. M2c and Serratia marcescens Mb4, 682.65 – 203.85 mg/l for Bacillus aerius TPM-23and 753.32 mg/l – 324.77 mg/l for Proteus mirabilis LS-3 and the new unidentified bacterium. The effect of bacterial growth across the days showed a p-value of 0.000 less than the α-value 0.01, this concluded that the growth of the bacteria across the days was significant for both vapour phase test and adaptability test. From this study it is evident that Serratia marcescens Mb4 and Lysinibacillus spp. M2c could be used to effectively treat crude oil-polluted environment.
    VL  - 5
    IS  - 1
    ER  - 

    Copy | Download

Author Information
  • Department of Microbiology, Chukwuemeka Odumegwu Ojukwu University, Anambra, Nigeria

  • Department of Biological Sciences, Chukwuemeka Odumegwu Ojukwu University, Anambra, Nigeria

  • Department of Microbiology, Chukwuemeka Odumegwu Ojukwu University, Anambra, Nigeria

  • Department of Microbiology, Chukwuemeka Odumegwu Ojukwu University, Anambra, Nigeria

  • Department of Biochemistry, Chukwuemeka Odumegwu Ojukwu University, Anambra, Nigeria

  • Sections